PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0280s0090.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 183aa    MW: 20490 Da    PI: 8.1448
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0280s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-18755254
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                            +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  SapurV1A.0280s0090.1.p  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55
                            69******9.**********8.....334**********************8775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.57E-33666No hitNo description
SMARTSM003804.4E-39770IPR001471AP2/ERF domain
PROSITE profilePS5103220.85764IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-33764IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-21766IPR016177DNA-binding domain
PfamPF008472.0E-11756IPR001471AP2/ERF domain
PRINTSPR003672.9E-11819IPR001471AP2/ERF domain
PRINTSPR003672.9E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MTRPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPKPR  60
TNFPYNPNEP QSSSSKLLSA TLAAKLHKCH MASLQATKKN ETGQSYEAQC KKTFTSSHGI  120
AGKTVGTCSK WQEGNWVGED SQVGNGDHEQ QYFKSLEAHH IEQMIEELLD CGSMEFCSVG  180
SP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-17868667ATERF1
3gcc_A5e-17868667ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2080910.0AC208091.1 Populus trichocarpa clone JGIACSB09-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002297803.21e-124hypothetical protein POPTR_0001s14720g
SwissprotQ94AW54e-73ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLB9GMD01e-124B9GMD0_POPTR; Uncharacterized protein
STRINGPOPTR_0001s14720.11e-123(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-50ERF family protein